YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37678876, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELVISLLQQ MCVYLVLAYM LSKTPIILPL LNISSRLSHR VLCYLLFSAF CILGTYFGLH  60
   61 INDAIANTRA IGAVMGGLFG GPIVGFAVGL TGGLHRYTLG GFTDLACAIS TTAEGLIGGL 120
  121 LHIYLIKKNK GAQLFNPSVV FSITFVAEII QMIILLVVAK PFDQAYSLVS TIAAPMIIAN 180
  181 SVGAALFMSI LQDRKTIFEK YSATFSRRAL TIADRSVGIL HTGFNSANAE KIARIIYEET 240
  241 NVGAVAITDQ EKILAFVGIG DDHHKPNTPI SSQSTLDSMS QNAIIYLDGS ERPYQCSLAA 300
  301 DCKLGSALII PLRAGKEVVG TIKLYEPKRK LFSTINMSMA EGIAQLLSSQ ILYGDYQQQQ 360
  361 TLLTQSEIKL LHAQVNPHFL FNALNTISAV IRRDPDKARE LIQNLSHFFR SNLKQNINTV 420
  421 TLKEELAHVN AYLSIEKARF ADRLEIEIDI TPELFDIKLP SFTLQPLVEN AIKHGISNML 480
  481 EGGRVRIYSQ SCEQGDVIVV EDNAGSYQPP AENHSGLGME IVDKRLTHHF GRDSALKIEA 540
  541 KEHQFTKMSF IIPRSHHTAI

Type	Start	End	Confidence
Cytoplasmic	1	10	0.70
Transmembrane Helix	11	31	0.81
Non-Cytoplasmic	32	40	0.55
Transmembrane Helix	41	60	0.95
Cytoplasmic	61	69	0.63
Transmembrane Helix	70	94	0.86
Non-Cytoplasmic	95	101	0.64
Transmembrane Helix	102	126	0.85
Cytoplasmic	127	133	0.72
Transmembrane Helix	134	159	0.84
Non-Cytoplasmic	160	167	0.63
Transmembrane Helix	168	191	0.88
Cytoplasmic	192	336	0.70
Transmembrane Helix	337	353	0.27
Non-Cytoplasmic	354	560	0.57