YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37197583, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.63
Transmembrane Helix	26	50	0.86
Cytoplasmic	51	70	0.61
Transmembrane Helix	71	88	0.57
Non-Cytoplasmic	89	92	0.63
Transmembrane Helix	93	119	0.73
Cytoplasmic	120	155	0.85
Transmembrane Helix	156	176	0.91
Non-Cytoplasmic	177	192	0.85
Transmembrane Helix	193	212	0.94
Cytoplasmic	213	220	0.85
Transmembrane Helix	221	240	0.95
Non-Cytoplasmic	241	255	0.76
Transmembrane Helix	256	276	0.82
Cytoplasmic	277	314	0.92
Transmembrane Helix	315	335	0.90
Non-Cytoplasmic	336	361	0.87
Transmembrane Helix	362	385	0.88
Cytoplasmic	386	400	0.96
Transmembrane Helix	401	423	0.89
Non-Cytoplasmic	424	430	0.71
Transmembrane Helix	431	452	0.91
Cytoplasmic	453	491	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKHRLAQT QFEVTMTDLI NLMNDLLWGS ILVYLLVGVG IYFTVRLGFI QFRHFGHMFS  60
   61 VLKNSRKSDN AGISSFQALC TSLAARVGTG NMAGVAVALT AGGPGAIFWM WLIAMLGMAT 120
  121 SFAESTLAQL YKTKDDDGNY RGGPAYYMEK GLGMRWMGVL FSIFLIIAFG LVFNAVQANS 180
  181 IANAMQNAFG WENAYVGVVI VVLSGVIIFG GIKRIARTAE LIVPVMALAY LALALFVMFS 240
  241 NLEKLPDVLM LIFKSAFGLQ EAAAGGLGYA IAQAMINGIK RGLFSNEAGM GSAPNAAASA 300
  301 TPYPPHPASQ GYVQMLGVFM DTIVICSATV AIILMSGEYV PHGEITGIEL TQLALSSQVG 360
  361 SWGSIFVAVA IFFFAFTSII ANYSYAETNL VFLEHNHKAG LNVFRLVVLG LVGFGAIAPL 420
  421 PVVWALADVS MGLMAIVNLV AILLLSGIVI KLAKDYNRQL QAGKLPTFNA DDFPELKSQL 480
  481 EEGIWDNNKK D