YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37197539, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMNADLSRW AIKQTYRQMK KNKRLMVMAG GTGGHVFPGL AVAKKLQQQG WEIRWLGTAD  60
   61 RMEAELVPKH GIDIDFIKVK GLRGQGIKRL VLAPFQILNA IFQAKAHIKR WQPDAVLGMG 120
  121 GYVSGPGGIA AWLSGIPVVL HEQNAVAGLT NHWLAKIAKK VFQAFPGAFK DAPVVGNPVR 180
  181 EDVVALPDPM QRMQDREGAV RILVMGGSQG ARILNQTMPQ VMAQLGSGFE IRHQAGKGSA 240
  241 DEVRLAYQQV GVEHVEVSEF IDDVAAQYAW ADLLVCRSGA LTVSEVSAAG VGAIFIPFMH 300
  301 KDRQQALNAD HLVACGAALM IEQPQLTVDK LAGEIQKLGR DTLLSMALHA RAAAQNNADQ 360
  361 VVADAIVALT EQK

Type	Start	End	Confidence
Cytoplasmic	1	24	0.70
Transmembrane Helix	25	43	0.54
Non-Cytoplasmic	44	373	0.84