YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85083018
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.85
Transmembrane Helix	34	53	0.93
Cytoplasmic	54	78	0.80
Transmembrane Helix	79	99	0.90
Non-Cytoplasmic	100	104	0.71
Transmembrane Helix	105	126	0.92
Cytoplasmic	127	132	0.83
Transmembrane Helix	133	153	0.90
Non-Cytoplasmic	154	171	0.79
Transmembrane Helix	172	192	0.93
Cytoplasmic	193	200	0.82
Transmembrane Helix	201	222	0.88
Non-Cytoplasmic	223	236	0.72
Transmembrane Helix	237	258	0.93
Cytoplasmic	259	270	0.73
Transmembrane Helix	271	290	0.68
Non-Cytoplasmic	291	295	0.53
Transmembrane Helix	296	317	0.89
Cytoplasmic	318	798	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQAAQILEV AHHVYARADD AADLHATRPP SYKIIGILLA VGSGFFIGTS FVVKKMGLLK  60
   61 ANEKYNEVAG EGYGYLKNAW WWAGMILMLI GELLNFAAYM FVDAILVTPL GALSVVVATV 120
  121 GSAIVLKERL SMIGKVSCFL CIVGSVVIVL NAPQESAVAN IQQFQQFVVT PSFLSYAGVI 180
  181 VLGAVIAAWY AGPRWGNKNM LVYISICSWI GGLSVVSTQG LGSAIVAQAG GEAQFKGWFI 240
  241 YIVIIFFIAS LLTELIYLNK ALNLFNAAMV TPTYYVYFTS TTIITSAVLF KGFKGTAVSI 300
  301 VTVVFGFLTI CSGVVLLQLS KSAKDVPDAA VLSGDLDQIR TVAEQEQPET EPKADALRGA 360
  361 AAIVRRLSSA KQQKMEMEEL KRLHEEKMRE ALETVGEDGP VYEWDGLRRR KTVLGSNSAS 420
  421 QRSRAATSAT FQLPMPTPHP PLGWSHFPTE EELAAAARPA SPALSSIVGT IRNRARSVLL 480
  481 PGHPNFRPTS ASNKVQSPMH PVQLTEIAVP AQDFDEETGY YPPGSAAGPS SKGYMYDRPG 540
  541 SRGSISSSAR RVQFSTDANH PSSSTLAAPL APPPLRTPTG ATRQFSFQSV FKRGDRRSQH 600
  601 THTQSDGANS HKSSHSSDKQ DRDKLTTHRG LSTPHIRRGA SEEETLGLVR GDSRDFRTTP 660
  661 RTSKHYDDDD GDDGSEEFEE VGRYMDEKQS RYGPSITHSP PRAPGVTGVR GGTEQQYPGG 720
  721 EEEDVKKEYT EHMESGGQGQ SQGQGQQHRS SRSDINSYRE RLRRIREHER HSDNNGSGSG 780
  781 PSSPSKSSSN RGDGGGFI