YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85085443
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	139	0.84
Transmembrane Helix	140	163	0.84
Non-Cytoplasmic	164	193	0.80
Transmembrane Helix	194	217	0.81
Cytoplasmic	218	222	0.60
Transmembrane Helix	223	242	0.89
Non-Cytoplasmic	243	271	0.83
Transmembrane Helix	272	293	0.88
Cytoplasmic	294	304	0.86
Transmembrane Helix	305	325	0.91
Non-Cytoplasmic	326	401	0.80
Transmembrane Helix	402	422	0.79
Cytoplasmic	423	433	0.78
Transmembrane Helix	434	455	0.85
Non-Cytoplasmic	456	459	0.54
Transmembrane Helix	460	480	0.64
Cytoplasmic	481	487	0.59
Transmembrane Helix	488	508	0.82
Non-Cytoplasmic	509	513	0.52
Transmembrane Helix	514	531	0.70
Cytoplasmic	532	853	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEDDMLRLN SRANFRFRSL YRVSVRGVVG FPAAGSTTVC KREMNGVGWD AWRDTYLDAV  60
   61 ASEFHCMAST STAGDRIKKF LGIPADERLN DTACYVDGSF VESEPTTQDF LNEIRPTVQG 120
  121 TLNYLRELFP FVNWIFHYNL TWLLGDFIAG VTVGFVVVPL GFCYVKGYND RSTIVGNIIA 180
  181 NVQKDHPDFD AGDIARTLAF ISGAMLLFLG LIRFGFIVEF IPIVAISAFM TGSAISIAAG 240
  241 QVSTLMGIPN INSREETYKV IINTLKGLPN THLDAAMGLT ALFGLYFIRW FCTQMGKRYP 300
  301 RQQRAWFFVS TLRMVFIIIL YILVSWLVNR HVKDPKKAHF KILGHVPSGF QHKGAPRLDN 360
  361 EILSAISGDI PTTILVLLIE HIAISKSFGR VNNYIINPSQ ELVAIGFTNL LGPFLGGYPA 420
  421 TGSFSRTAIK AKAGVRTPLA GIFTAVLVLL ALYALTSVFF YIPNSALAAM IIHAVGDLIT 480
  481 PPREVYKFWL TSPLEVVIFF AGVFVSIFTS IENGIYVTVA ASGAVLLWRI AKSPGKFLGQ 540
  541 TEIYTAPREL VRGSKDSGLT QSLLQKSEHH TAFLSLDRDD LSNPELQIST PWPGIFVYRF 600
  601 GEGLNYVNSA KHLDNLTIHV FKHTRRTELN KFEKLGDRPW NDPGPRRGQA FLTDELVSRP 660
  661 TLRAIILDFS AVNCIDVTAA QALQDLRNQF DRYAHPDKVE WHFAGVSNRW TKRALVASGF 720
  721 GVDSLRTAKV QRENHKGGVQ EVDQGPLVAI GPSVSASDIE AVPVGTSGSG STDEKRPEGE 780
  781 GGATNGGMEK GSANGEDIST VPTATSADAC ALARDAGGKR LVPVFGINRP FFHIDVATAL 840
  841 KSAVRNTGVV AAE