YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37201567, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.99
Transmembrane Helix	37	59	0.91
Non-Cytoplasmic	60	67	0.77
Transmembrane Helix	68	88	0.87
Cytoplasmic	89	104	0.89
Transmembrane Helix	105	128	0.89
Non-Cytoplasmic	129	133	0.89
Transmembrane Helix	134	154	0.94
Cytoplasmic	155	166	0.80
Transmembrane Helix	167	188	0.86
Non-Cytoplasmic	189	207	0.76
Transmembrane Helix	208	226	0.91
Cytoplasmic	227	241	0.85
Transmembrane Helix	242	265	0.87
Non-Cytoplasmic	266	276	0.89
Transmembrane Helix	277	299	0.90
Cytoplasmic	300	311	0.86
Transmembrane Helix	312	332	0.93
Non-Cytoplasmic	333	338	0.79
Transmembrane Helix	339	361	0.91
Cytoplasmic	362	369	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPISASRTN LKEVDMNQTV SCEESSAYQK MSFLDRYLTL WIFLAMAVGV GIGVLFPQVA  60
   61 QWNEALSVGS TNIPLAIGLI LMMYPPLAKV NYSLLGEVTR DKRAITLSLV MNWIVGPILM 120
  121 FALAIIFLRD QPGYMVGLIL IGLARCIAMV LVWNDISGGN KEYGATLVAL NSAFQIFTYS 180
  181 FMAWLFITVL PPYFGLESVV VDVTILDIAQ SVLIYLGIPF LAGFLSRKWL VAAKGEQWYN 240
  241 EVFIPRISPI TLVALLATIV LMFSLKGDMI IELPMDVFQI AIPLVIYFMV MFFASFYIGK 300
  301 RLGLPYDQNA SIAFTSSGNN FELAIAVSIA VFGLNSDQAF AGVIGPLVEV PVLIALVNVA 360
  361 LRMKRKYDA