YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37676921, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.81
Transmembrane Helix	75	95	0.92
Non-Cytoplasmic	96	101	0.66
Transmembrane Helix	102	120	0.90
Cytoplasmic	121	128	0.62
Transmembrane Helix	129	150	0.90
Non-Cytoplasmic	151	174	0.74
Transmembrane Helix	175	196	0.68
Cytoplasmic	197	198	0.43
Transmembrane Helix	199	225	0.76
Non-Cytoplasmic	226	270	0.77
Transmembrane Helix	271	294	0.85
Cytoplasmic	295	303	0.90
Transmembrane Helix	304	324	0.92
Non-Cytoplasmic	325	331	0.71
Transmembrane Helix	332	354	0.83
Cytoplasmic	355	393	0.94
Transmembrane Helix	394	418	0.52
Non-Cytoplasmic	419	439	0.57
Transmembrane Helix	440	462	0.87
Cytoplasmic	463	474	0.88
Transmembrane Helix	475	494	0.94
Non-Cytoplasmic	495	516	0.85
Transmembrane Helix	517	538	0.87
Cytoplasmic	539	553	0.70
Transmembrane Helix	554	573	0.88
Non-Cytoplasmic	574	578	0.70
Transmembrane Helix	579	596	0.88
Cytoplasmic	597	607	0.71
Transmembrane Helix	608	628	0.94
Non-Cytoplasmic	629	635	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYVIFGRND FHYFPISIKN KGVNSRQINK PITKTISFFQ LSVSVEHCNW KSDQPDTPTP  60
   61 SRLIKLYEEV LMSETMLALL AFSPIVVAAI LLVGLNWPAK KAMPVAFALT VVIALFGWDM 120
  121 STTRVIASVL QGLGITISVL WIVFGAIFLL NTLKHTGAIT TIRNGFTDIS ADRRVQAIII 180
  181 AWCFGSFIEG ASGFGTPAAI AAPLLVAIGF PALAAVLMGM MIQSTPVSFG AVGTPIIVGV 240
  241 NKGLDTHNIS EALIAHGSSW DIYLQQITSS VAMIHATVGT IMPVLMAMML TRFFGKNRSW 300
  301 SEGLDILPFA LFAGFAFTVP YALTGVFLGP EFPSLIGGLV GLAIVVTAAK KGFLVPKSQW 360
  361 DFEAEDKWPA EWLGSLKIDL EQVQGKPMSL VKAWTPYVLL AVILVASRVS ADFKALLTGI 420
  421 SISSGTILGE AGISTAFQPL YLPGGILVFV ALLAVLIQAG SLKPMAKALG ESSKTLVGAG 480
  481 FVLVFTIPMV RIFINSGVNA ADLASMPVTT ANFAADLVGS AFPALSATVG ALGAFIAGSN 540
  541 TVSNMMFSQF QFEVAQTLTI SSAVVVALQA VGAAAGNMIA IHNVVAASAT VGLLGREGAT 600
  601 LRKTIIPTFY YLVVTGIIGL TLIYGLQITD ALMTP