YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37201013, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.91
Transmembrane Helix	6	25	0.93
Cytoplasmic	26	31	0.95
Transmembrane Helix	32	50	0.93
Non-Cytoplasmic	51	56	0.76
Transmembrane Helix	57	75	0.97
Cytoplasmic	76	86	0.86
Transmembrane Helix	87	107	0.94
Non-Cytoplasmic	108	125	0.96
Transmembrane Helix	126	149	0.91
Cytoplasmic	150	166	0.91
Transmembrane Helix	167	185	0.87
Non-Cytoplasmic	186	190	0.73
Transmembrane Helix	191	210	0.91
Cytoplasmic	211	218	0.68
Transmembrane Helix	219	238	0.82
Non-Cytoplasmic	239	242	0.66
Transmembrane Helix	243	263	0.88
Cytoplasmic	264	464	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGLVQAAY IVAALFFILS LAGLSKQESA RSGNYYGIAG MAIALLATIF SPSAEGFAWV  60
   61 IVAMVIGGGI GIHYAKKVEM TEMPELVAIL HSFVGMAAVL VGYNSYLEPP APVSLDPAGM 120
  121 HAEHVIHLVE VFLGVFIGAV TFTGSIVAFG KLRGIISSSP LNLPHKHKMN LAAIVVSTLL 180
  181 MIHFVNADGS MFALIVMTLI AFAFGYHLVA SIGGADMPVV VSMLNSYSGW AAAAAGFMLA 240
  241 NDLLIVTGAL VGSSGAILSY IMCKAMNRSF ISVIAGGFGQ EVVISGDEEY GEHREINAED 300
  301 VADMLKNSKS VIITPGYGMA VAQAQYPVHE ITEKLRAQGV NVRFGIHPVA GRLPGHMNVL 360
  361 LAEAKVPYDI VLEMDEINDD FSDTDTVLVI GANDTVNPAA LEDPNSPIAG MPVLEVWHAK 420
  421 NVIVFKRSMN TGYAGVQNPL FFKENTSMLF GDAKDSVDAI SKAL