YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37200939, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVATSENTQ YFSPKEMMAE AEKFALSKAN KTSAMTLGLA IMAGAFIGLA FLFYITVTTG  60
   61 SANAGWGLSR FAGGLAFSMG LILIVICGGE LFTSSVLSSI SWANKQISFT KMLAIWGKVY 120
  121 IGNFIGAMFL LLLVTGAGLY QMDGGQWGLN ALNIAQHKLH HTTIQAFSLG VLCNLLVCLA 180
  181 IWLTFSSANA MTKAVMTMLP VAMFVSSGFE HCVANMFMVP LGIVIANFAP DAFWAQVGAN 240
  241 ASQYADLNVG HFITANLIPV TLGNIVGGAV LVGLANWCIY RRPELKAAKI STITQTTHIT 300
  301 SVKEFTMKNA AVVRDIMDAQ PVVLGVEMPI ATALDTLLDN HIISAPVVDI EGRLVGFLSA 360
  361 HDVMVDLWCQ DYLPSTGQKV VDLMSRDVVA IDVNDRLVDV VEFLCIDKEQ LYPTSSMGIA 420
  421 TRMTSLSLEE RAKSMKVNKP HVLPVLENGK FAGVVSRQEV LNALRPIYGE RLNLVETRQL 480
  481 ETA

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	57	0.92
Non-Cytoplasmic	58	74	0.85
Transmembrane Helix	75	98	0.88
Cytoplasmic	99	118	0.85
Transmembrane Helix	119	140	0.94
Non-Cytoplasmic	141	163	0.92
Transmembrane Helix	164	185	0.92
Cytoplasmic	186	200	0.77
Transmembrane Helix	201	226	0.75
Non-Cytoplasmic	227	256	0.88
Transmembrane Helix	257	280	0.90
Cytoplasmic	281	483	0.99