YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37200906, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.17
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.73
Transmembrane Helix	21	40	0.51
Non-Cytoplasmic	41	138	0.63
Transmembrane Helix	139	154	0.17
Cytoplasmic	155	262	0.53
Transmembrane Helix	263	286	0.86
Non-Cytoplasmic	287	297	0.45
Transmembrane Helix	298	323	0.85
Cytoplasmic	324	332	0.44
Transmembrane Helix	333	358	0.84
Non-Cytoplasmic	359	378	0.50
Transmembrane Helix	379	400	0.93
Cytoplasmic	401	415	0.44
Transmembrane Helix	416	438	0.85
Non-Cytoplasmic	439	456	0.51
Transmembrane Helix	457	480	0.85
Cytoplasmic	481	518	0.45
Transmembrane Helix	519	541	0.87
Non-Cytoplasmic	542	558	0.60
Transmembrane Helix	559	581	0.84
Cytoplasmic	582	593	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTCRTLLAQ AKRHKVTTMK IAIITACPSG VANSIIAAGL LEQAAKSLNW DASIECQSSV  60
   61 MPTTPLSAQQ IADADVVVIA ANTPIDESRF VGKKLYRSEI SAVTSDPNAF LQSAVEKAQL 120
  121 LQASAGVQPT VQTAAKKIVA ITACPTGVAH TFMAAEALEE EGKRRGHQIK VETRGSVGAK 180
  181 NQLTEQEIAD ADLVIIAADI EVPLDRFNGK LMYRTKTGPA LKKTGEEMDK AFAQATVYQH 240
  241 TASAGSSNAS EEKKGVYKHL MTGVSHMLPV VVAGGLIIAL SFVFGIEAFK EEGTLASALM 300
  301 TIGGGSAFAL MIPVLAGFIA FSIADRPGLA PGLIGGMLAS STGAGFLGGI AAGFIAGYSA 360
  361 KFIADKVQLP QSMEALKPIL IIPFIASLFT GLTMIYIVGG PVSSIMSAMT EFLNNMGSAN 420
  421 AVLLGVILGA MMCFDLGGPV NKAAYTFGVG LLASQTYAPM AAIMAAGMVP ALGMGLATFL 480
  481 ARDKFEPSER EAGKASFVLG LCFISEGAIP FAAKDPMRVI PACMAGGALT GALSMLFGAK 540
  541 LMAPHGGLFV LLIPNAITPV LMYLVAIAAG TALTGFGYAF LKNRAEAKEA ATA