YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37200771, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.52
Transmembrane Helix	29	49	0.88
Non-Cytoplasmic	50	55	0.45
Transmembrane Helix	56	79	0.69
Cytoplasmic	80	80	0.28
Transmembrane Helix	81	99	0.70
Non-Cytoplasmic	100	104	0.53
Transmembrane Helix	105	126	0.88
Cytoplasmic	127	132	0.67
Transmembrane Helix	133	152	0.83
Non-Cytoplasmic	153	174	0.81
Transmembrane Helix	175	197	0.91
Cytoplasmic	198	227	0.87
Transmembrane Helix	228	249	0.90
Non-Cytoplasmic	250	256	0.73
Transmembrane Helix	257	277	0.64
Cytoplasmic	278	281	0.55
Transmembrane Helix	282	302	0.77
Non-Cytoplasmic	303	308	0.44
Transmembrane Helix	309	323	0.41
Cytoplasmic	324	328	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEIMSKRK SNETNKTWIS KEWLIEQKSL IALLFLIVVV SFLNPNFFTV DNILNILRQT  60
   61 SVNAIIAVGM TLVILTAGID LSVGSVLALC GAFAASLVAM EVPVLIAVPT ALLAGASLGA 120
  121 ISGVIIAKGK VQAFIATLVT MTLLRGVTMV YTDGRPISTG FTDTADAFAW FGTGYALGIP 180
  181 VPVWLMVVVF AAAWYLLNHT RFGRYVYALG GNESATRLSG INVDKVKIGV YAICGLLAAL 240
  241 AGIIVTSRLS SAQPTAGMGY ELDAIAAVVL GGTSLMGGKG RIMGTLIGAL IIGFLNNALN 300
  301 LLDVSSYYQM IAKAAVILLA VMVDNKNK