YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37200409, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELFSLFDIN NTLVNIPIGD GYAMSWIEAI GTIFGLLCIW FASQEKTINY LFGLINVTLF  60
   61 AVIFFQIQLY GLLLLQLFFF CANVYGWYAW TRPNAEGDLL EVRWLSQKKM VITAGLCVCA 120
  121 IALLTVYIDP FFFALANIAV DAMNVFGAGL AEPVLEPDAF PFWDSTMTVL SIVAQILMTR 180
  181 KYVENWVLWV VINIISVGIY AMQGVYAMSL QYAILMFIAA NGTREWARTA KRNQASTQQK 240
  241 SEKSADEAVA

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.91
Transmembrane Helix	21	41	0.93
Cytoplasmic	42	47	0.81
Transmembrane Helix	48	67	0.89
Non-Cytoplasmic	68	71	0.76
Transmembrane Helix	72	91	0.92
Cytoplasmic	92	109	0.96
Transmembrane Helix	110	133	0.88
Non-Cytoplasmic	134	158	0.86
Transmembrane Helix	159	178	0.85
Cytoplasmic	179	185	0.75
Transmembrane Helix	186	207	0.85
Non-Cytoplasmic	208	250	0.50