YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37200225, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.65
Transmembrane Helix	12	33	0.82
Cytoplasmic	34	40	0.64
Transmembrane Helix	41	60	0.92
Non-Cytoplasmic	61	67	0.65
Transmembrane Helix	68	86	0.84
Cytoplasmic	87	95	0.56
Transmembrane Helix	96	118	0.87
Non-Cytoplasmic	119	158	0.42
Transmembrane Helix	159	181	0.80
Cytoplasmic	182	223	0.63
Transmembrane Helix	224	242	0.60
Non-Cytoplasmic	243	249	0.85
Transmembrane Helix	250	272	0.88
Cytoplasmic	273	283	0.86
Transmembrane Helix	284	306	0.87
Non-Cytoplasmic	307	313	0.76
Transmembrane Helix	314	336	0.91
Cytoplasmic	337	345	0.84
Transmembrane Helix	346	365	0.89
Non-Cytoplasmic	366	380	0.75
Transmembrane Helix	381	404	0.87
Cytoplasmic	405	408	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSVVSVGPQ ESFLIAVGVL FLGHFINGQI PILKRFNIPE PIVGGLVVAL VITLAHFNGI  60
   61 TFDFDLPLQK TFMLMFFATV GLAANYKQLL KGGVKVLLFL LIASIYIVVQ NGIGVSLASM 120
  121 LGLDPLLGLI AGSITLSGGH GTGAAWSHTF TQNYGLENAL EIAMASATFG LVMGGILGSP 180
  181 VAQRLVDKHQ LESEYGRELQ AHQRFADLVT YNENEEDKVT AKKVIESLAL MFLCVIGARY 240
  241 LSQWVNQLDI AWLMIPDFVY ALLLGVFVTN FLELTKVRKL DLETVDMLGT VSLSLFLAMA 300
  301 LMSLKLWNIF DLAMPFLFIL SIQSLVMVLF SYFVTFKVMG RNYDSAVIAS GHCGFGLGAT 360
  361 PTAVMNMGSI VNRFGPSPQA FLVVPIVGAF FIDLVNMLIL QGFIAFLG