YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32406262, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.99
Transmembrane Helix	67	88	0.92
Non-Cytoplasmic	89	104	0.90
Transmembrane Helix	105	124	0.93
Cytoplasmic	125	133	0.81
Transmembrane Helix	134	155	0.93
Non-Cytoplasmic	156	163	0.69
Transmembrane Helix	164	185	0.91
Cytoplasmic	186	194	0.79
Transmembrane Helix	195	215	0.93
Non-Cytoplasmic	216	223	0.76
Transmembrane Helix	224	244	0.95
Cytoplasmic	245	264	0.92
Transmembrane Helix	265	285	0.95
Non-Cytoplasmic	286	292	0.86
Transmembrane Helix	293	315	0.91
Cytoplasmic	316	331	0.92
Transmembrane Helix	332	353	0.92
Non-Cytoplasmic	354	369	0.84
Transmembrane Helix	370	389	0.94
Cytoplasmic	390	395	0.76
Transmembrane Helix	396	417	0.85
Non-Cytoplasmic	418	426	0.81
Transmembrane Helix	427	448	0.88
Cytoplasmic	449	460	0.74
Transmembrane Helix	461	483	0.79
Non-Cytoplasmic	484	532	0.89
Transmembrane Helix	533	551	0.95
Cytoplasmic	552	693	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVSQSTAS LSSSGKSSHH NRPGDESKGA GSMAEPNDVE KLSPSPPPTG QPQPNEKDLY  60
   61 KPKSPRFWLT LLCNFMALFL VALDRTIIAT AVPRISDEFN ALGDIGWYGS AYMLTTSCAQ 120
  121 LVYGRIYKFY DMKWVFLVSV VVFEIGSAIC GAAPSSTVFI VGRAIAGMAS AGIFSGCMLI 180
  181 MIPMVPLHRR PAFQGLFGMV FGIASVMGPL IGGGFTSGAT WRWCFYINLP IGAVSFIFMV 240
  241 FFWNPPKEKR PPARPGVHIK RLDPIGMIFF LPGTVCLLLA LQWAGSTYAW NSWRIILLFA 300
  301 LFGACTAAFI VVQILKPKTA MVPPKVITQR SVAFGTAFTF FLAGSMLMMV YYVPIWFQTV 360
  361 KQVDPIKSGI YTLPLVLSLV VSSIIAGIIT QKIGYYVPSM LVAPSLMSVG EGLMSTLNPG 420
  421 SPSSHWAAFQ FLTGFGLGFG MQTSGLAIQT VLPKEDVSTG IAINFFVQQL GGAVFTSVGQ 480
  481 TILSNLLVKK LSGIPGIGGH VIVNEGATQL TNEVPPEYKD RVIGAYNYAC QRIFLAAMGL 540
  541 AFASLLCAFG MEWKSIKKGR QGPPPSQPPE NGSQGPNEGL LRPSSSFPLK DPSEGPTTNG 600
  601 LIMAKKEAPA EGLPRQHLRS RNSRRESLAS EGRASGVLTK PPPAHMIPGS PTSAKDSPRS 660
  661 SDQKIEQDRG SSYHSAPTNM GSQEMKELPS PAA