YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|35211586, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDRKPEAGE AMGSDEDESY VDYHYDDPGT MPGTLSIDKN APPPEIHLID YDAEQSTGRR  60
   61 VENPEELTPY LDNHSVSWAD VRGFGSEDIL RRLGKVFGLH PLVLEDIVNV PQRPKVEEYK 120
  121 DHLLIIARMV CPTSETAEEF FSEQVSLILG KNYLLTVQEE AKFDVFGPVR ERIRTAKGII 180
  181 CNQRADYLAY TLLDAIIDGF YPVLEDFGER LEELEAEVVE NPTRATLERI YLLRRELLML 240
  241 RRAIWPQRDV INALIRDANP LIGEEVRLYL RDCYDHAIQI IDMVETYREL ASSLTDIYMS 300
  301 SVSNRMNEVM KTLTVISAIF IPLTFIAGVY GMNFDPEKSP WNMPELEWYW GYPFSLVLMF 360
  361 IVAVGLVVYF WRRGWFESFS SQSKK

Type	Start	End	Confidence
Cytoplasmic	1	311	0.98
Transmembrane Helix	312	332	0.92
Non-Cytoplasmic	333	349	0.92
Transmembrane Helix	350	371	0.94
Cytoplasmic	372	385	0.93