YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16944622, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSPLPRLAA VALVGVDVAN AAYSIATVAD IKKTSADIAF DMMQYYKGNL TGQTPGILPG  60
   61 PPPAGDYYWW EAGAMWGALI DYWRFTGDAS YNDVITQALL WQVGPGQDYM PLNVTASLGN 120
  121 DDQGFWGMTA MTAAENNFPN PPADQPQWLG LAQAVFNTQA NPDRHDKTCN GGLRWQIPPL 180
  181 NNGYNYKNSI ANGCFFNLGA RLARYTGNKT YADWAETTWD WMRGVGLMDD NYSIHDGAHV 240
  241 ETNCTDINNA QFSYNSGVFV LGAAHMYNYT NTTQTDGSPV WKDRLDKLLN ATLVRFFPDN 300
  301 IAFEPACEDQ MSCTTDMLSF KGYVHRWLSI TTQIAPYTAP VILPVLKTSA EAAVQTCTGE 360
  361 QNGRMCGFSW KKKKYDGSHG VGQQMNVLGA VSSLLIEQPG KAPVTNSTGG TSKGNPNAGS 420
  421 QSDSFTHDKP VTTADKAGAG IVTFLLAAST LGTFVWMGIG K

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	436	0.99
Transmembrane Helix	437	459	0.73
Cytoplasmic	460	461	0.66