YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85099769
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNNTSGSD IPDGINPDLW TAWMELRKEC YPDLIEGVNP SYGYRPTLGA GIAFDVLFGI  60
   61 CVIGHLIQLI RFRQWTSGLM MVGAITEAIG WAGRTWSAKC PYNNDAFLMQ ITTLIIAPTF 120
  121 FAAALYVLLG MLIRILGRQT SVLSAKWYAI IFCSCDVISL VIQAIGGGMA SSESNKEGGD 180
  181 TKPGTHTMVA GIVFQLFTMT VFAVLVLDFL RRVYALAKGR RDGRGGLTRN MKLTVLALFV 240
  241 SFVMIYIRSV YRTVELAQGW SGYLITHEGY FIGLDATLMV ISAGIFLVLD PAVLLRHEMI 300
  301 KVTTNGSGKE EQGTTTGNDS EGQGGVRE

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.87
Transmembrane Helix	47	67	0.88
Cytoplasmic	68	74	0.75
Transmembrane Helix	75	95	0.84
Non-Cytoplasmic	96	110	0.85
Transmembrane Helix	111	133	0.88
Cytoplasmic	134	146	0.80
Transmembrane Helix	147	167	0.94
Non-Cytoplasmic	168	187	0.91
Transmembrane Helix	188	210	0.91
Cytoplasmic	211	229	0.93
Transmembrane Helix	230	250	0.93
Non-Cytoplasmic	251	270	0.90
Transmembrane Helix	271	289	0.96
Cytoplasmic	290	328	0.93