YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85101432
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEERLFRFS RPEWLNSAWV RNAGVYAAGA FSANAMKIQF SLAFYTLLDS AVWSHSPLNA  60
   61 SDVHIHFVDW LPFIFSTLGM LIINSVEKAR LSSESFSYSG SGVAWKARVV LFLGFACLAG 120
  121 GMAGGVTVFV LKYVVKDVGF PALRMGVENL VANGLVGLSA VVLWISQNME DEYSYNLALS 180
  181 TTPSLPPHSK QVFMPGTESG NRM

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	38	0.87
Non-Cytoplasmic	39	64	0.84
Transmembrane Helix	65	86	0.88
Cytoplasmic	87	108	0.86
Transmembrane Helix	109	131	0.91
Non-Cytoplasmic	132	145	0.83
Transmembrane Helix	146	166	0.82
Cytoplasmic	167	203	0.86