YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28922248, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLRGVSRS ARALQPFSAQ FAVRRCASTQ TGAGAAAATP KSNIPDLAEL ETRSALDAPI  60
   61 PSEEDKKEFR PWKRAADRKA RLPSSRYQYH PPKYNRGPLH PIQSPPSSDP IARDFVPGPF 120
  121 NMPRLKETFR TVMASDLMTL AYIHTPPGTP KKEPTERLRA WEGDSPYFAN RARRAPRGAP 180
  181 ELPIRERDIS FRNIPEIKEI TVSTFVPLGL KNPDLLIVAR AVLLAMTGTM PEMTRSKNNV 240
  241 VQWQLQANKP AGCKTTIYGN AAWEFMDRLI HLVLPRIKDW KGVPASTGDG SGNVQFGLNP 300
  301 EDVQLFPEVE CNYDMYPAKM IPGCHIAIKT TATSDRQAKL LLQSLGVPFY SN

Type	Start	End	Confidence
Signal Peptide	1	29	0.54
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	352	0.99