YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85102300
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKKQSSSG GNKPSGSGSS SGRSSSGSSC RCSCRCRCSI GGWLKFFAIL FALVAPIAYV  60
   61 LEQRLESFYV FDTEHLHDLS KRAISAHGND TKAIVKYIVD ELNDRNGVAP YVNNDEEWVF 120
  121 NNAGGAMGAM YIIHASITEY LIIFGKPHPP ARVSQACASR FFRPITNSTL HTTGTAIGTE 180
  181 GHTGRHTADD YFHILTGTQT AYVPGEYEPE VYPPGSVHHL VRGTVKQYRM PESCFALEYA 240
  241 RGWIPPMLFF GYADTLSSTL DFPTLWRTSV ITGREMISNL LKGKF

Type	Start	End	Confidence
Cytoplasmic	1	40	0.96
Transmembrane Helix	41	61	0.91
Non-Cytoplasmic	62	285	0.72