YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34558449
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.94
Transmembrane Helix	5	23	0.92
Cytoplasmic	24	32	0.76
Transmembrane Helix	33	52	0.91
Non-Cytoplasmic	53	72	0.77
Transmembrane Helix	73	92	0.92
Cytoplasmic	93	99	0.78
Transmembrane Helix	100	120	0.90
Non-Cytoplasmic	121	125	0.81
Transmembrane Helix	126	144	0.92
Cytoplasmic	145	173	0.92
Transmembrane Helix	174	195	0.89
Non-Cytoplasmic	196	208	0.63
Transmembrane Helix	209	231	0.83
Cytoplasmic	232	240	0.85
Transmembrane Helix	241	263	0.86
Non-Cytoplasmic	264	272	0.67
Transmembrane Helix	273	294	0.90
Cytoplasmic	295	302	0.78
Transmembrane Helix	303	322	0.88
Non-Cytoplasmic	323	328	0.76
Transmembrane Helix	329	351	0.90
Cytoplasmic	352	360	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLENAGLFLG GLLLLIFGAD WLVRGASKLA FKLGISPLVV GLTVVAFGTS APELAINIQS  60
   61 SLGGQPDLAL GNVVGSNIFN VLFILGLSAL ITPLLVDRQL IRLDVPLMLV ASLAVYLLAL 120
  121 DGNLSTLEGG LLFGSMLFYL IFIIRQSRHE NQANDSQESS QSSPIPSKLD LLPFQLLLIL 180
  181 AGLAALVLGS GWLVGGAVAF ARHFGVSELI IGLTIVAAGT SMPEVATSIM AALKGERDIA 240
  241 VGNVVGSNIF NLLSVLGLTS LLVPGGIPIS TAALGFDLPV MVVVAFATLP IFFTGQIIDR 300
  301 WEGGIFLFYY IAYTLYLIMD ATSHDLLPLF GTTMLYFIAP LTLITLYLLF YREKRRSKGR 360
  361