YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34482529
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEAIEFTVG FSHGVEWGWP IGVYLLLAGI SGGAMIVALA LRYYKGQKEE TPLLKAASLV  60
   61 SFATIALGMI FLVGDLEKPL YFWKILIHYN FSSVMSIGVL ALCFYIPLSF LMVAIVFESI 120
  121 ITPWLQRSPL APLVRIYPLL RSLRKPLEAM TFLLALTVCA YTGFLISVLV RFPLLNTAIL 180
  181 PALFVASGLS AGTAFSSVVA AFFFKEETHS SDLKTLHAIE WPVMAAEILF LFMLFVSLVL 240
  241 GTQMGKSSAP AFFEGAYAGL LWIGVVGIGF GVPLVLNFAL GKKVASSHAS FYLSGISSVV 300
  301 GVLSLRLFIL YAGQTFAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.93
Transmembrane Helix	21	41	0.97
Cytoplasmic	42	52	0.81
Transmembrane Helix	53	73	0.95
Non-Cytoplasmic	74	93	0.87
Transmembrane Helix	94	117	0.87
Cytoplasmic	118	149	0.90
Transmembrane Helix	150	170	0.94
Non-Cytoplasmic	171	179	0.73
Transmembrane Helix	180	204	0.91
Cytoplasmic	205	220	0.91
Transmembrane Helix	221	242	0.89
Non-Cytoplasmic	243	257	0.86
Transmembrane Helix	258	280	0.92
Cytoplasmic	281	288	0.92
Transmembrane Helix	289	310	0.93
Non-Cytoplasmic	311	318	0.83