YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34482179
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	29	0.95
Non-Cytoplasmic	30	47	0.93
Transmembrane Helix	48	69	0.93
Cytoplasmic	70	88	0.94
Transmembrane Helix	89	109	0.95
Non-Cytoplasmic	110	141	0.95
Transmembrane Helix	142	160	0.95
Cytoplasmic	161	186	0.91
Transmembrane Helix	187	209	0.90
Non-Cytoplasmic	210	224	0.92
Transmembrane Helix	225	249	0.87
Cytoplasmic	250	258	0.82
Transmembrane Helix	259	279	0.96
Non-Cytoplasmic	280	312	0.89
Transmembrane Helix	313	332	0.89
Cytoplasmic	333	342	0.79
Transmembrane Helix	343	362	0.93
Non-Cytoplasmic	363	398	0.90
Transmembrane Helix	399	418	0.91
Cytoplasmic	419	442	0.77
Transmembrane Helix	443	462	0.91
Non-Cytoplasmic	463	467	0.68
Transmembrane Helix	468	488	0.91
Cytoplasmic	489	651	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRATLNPP VFFSSILLIF GFVLFGALMP QRANTLFSMI QKGIIEKLGW FYILSVALFL  60
   61 IFVLYLAISR HGDVKLGADH SEPEFSYKSW FAMLFSAGMG IGLMYFGVAE PVMHFLSPPK 120
  121 MEGGTVEAAK EAMKITFFHW GIHAWAIYAL VALALAYFSF RHQLPFTIRS AFYPLIGERI 180
  181 KGRLGDAIDT FAVISTMFGV ATSLGFGVLQ VNSGLSYLFE IPNTIWTQIL LIAFITSLAT 240
  241 ISVVLGLSGG IKRLSELNLF LAIALMLFVL LAGPTLFIIQ TFVQNIGAYL SDLTYKTFNL 300
  301 HAYEPTGWIG GWTIFYWAWW IAWSPFVGMF IARISKGRTI REFVIGVLMV PVGFTFLWLT 360
  361 VFGDSAIFLI LKENLTSLGS AVQADSTTAL FKFLESLPFS FITSLLATIL IITFFVTSSD 420
  421 SGSLVIDMLT SGGIKETPLW QRIFWSSSEG FVAAALLLAG GLGALQTASI IFALPFSIIM 480
  481 LFMAYGMHKA LRIEAIKKEA LKVQGAITFS PSYSPIPWQK RLKNLISRHK KSAITLFIQE 540
  541 RVFEAITAVS QELEREGVLS KVKKGEGSIS LEVLHGEEID FLYEVRNRGY TSTTFIMSSE 600
  601 SEDEIYQYHR AEVFLKEGSQ GYDLMGYSKE QIIADILNQY RRHMQFLHLL R