YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SWF1_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTIAIIAAV ILGISFMTFV AFFGRLPALR NTPISFLHRL IWIHLPNGIL TVDRTLTNGR  60
   61 LTTSLTRLGR HLWYDQHPTI LIFFFLLLSV GEYLYLPVAW PHFSFTHKFF GTIAILCPYI 120
  121 FLYLSAYTDP GVINAKTHVR EMARYPYDFT LFHPGTSCET CHLLKPARSK HCSICKKCVG 180
  181 RMDHHCIFIN NCVGANNQRW FILLLLSTAI LTLYGGVLGL VIIRAKIQAR FPYWTLMPWW 240
  241 TSTQAWNSGD LDFHRWLLLW SWGLQSGVAM GGVTLLALLT TPLVWGLLGY HLWLVYCGTT 300
  301 TNESMKWQDW QAEMDEGGVY KRRMAADGSR EKDLKVEPAW TRWPVEAEQI MVRTEDGKPP 360
  361 RSSHRLPGEG EWEAVWRLKD VENLYDIGFW DNLVDVFLPY FMFKESKGRS PVDEREFGRE 420
  421 RGRNRRRSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.60
Transmembrane Helix	5	29	0.86
Cytoplasmic	30	76	0.45
Transmembrane Helix	77	99	0.85
Non-Cytoplasmic	100	104	0.45
Transmembrane Helix	105	127	0.83
Cytoplasmic	128	199	0.48
Transmembrane Helix	200	225	0.85
Non-Cytoplasmic	226	262	0.54
Transmembrane Helix	263	289	0.78
Cytoplasmic	290	429	0.84