YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85085658
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIREDLVAS AAQFLQDPSV AASPIEKRIA FLQAKNLTQE EVSAALARAE SGGPPPPYAQ  60
   61 SPAYAQSAGP VAAQGGSPQY YGYPPYAWPQ SNTDGVRRDW RDLFILATVV GGASYGLYNL 120
  121 GKRYVYPLIA PPTPERLEQD KKSIDEQFDK TFQLVEQLAK DTEILKASEQ ERTERLDNAL 180
  181 EELETVVRDL KAANRRRDDE AQRVRDDVQN LRDSIPRALN NQKDLTDNRL RELNTELKSL 240
  241 KTLISQRMNP TATSTSVNNY LRPNTNGNAT PSSAPATPAL GGENGDLNSR AASAQDEQSR 300
  301 YQQEQQFAQP AAPKPSPFSS GIASAGKPTI PAWQLAMANK TASASTVGVT NGTTNDGSSS 360
  361 NGGDEAA

Type	Start	End	Confidence
Signal Peptide	1	21	0.54
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	367	0.98