YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GET1_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLLVVIFV IELFVQLVNT IGAATINNLL WRIALSLPLP LSAQFAAQRK KQKEYLAIRR  60
   61 ELNATSSQDE FAKWARLRRQ HDKLLEDLEK RKKELDAAKT KFDRTLTTVR VVATRGLQWF 120
  121 LPFWYSREPM FWLPYGWFPY YVEWFASFPR APLGSVSIVV WQWACTGVIK LVIETVMAVV 180
  181 GLIVAARQKQ QEKQKAKQAV PAAGGGDSKA EEAK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.56
Transmembrane Helix	8	31	0.62
Cytoplasmic	32	122	0.75
Transmembrane Helix	123	138	0.45
Non-Cytoplasmic	139	162	0.63
Transmembrane Helix	163	185	0.71
Cytoplasmic	186	214	0.80