YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIM22_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFPGMPGGA APSGGAAPGG YDPNDPNIKM MQKAMESCFA KTVMSGGAGF ALGGVFGMFM  60
   61 ASMAYDTPYH SPTTPGTGPG ANPAAAGIPG YKPVDLSSMP LKEQLKHGFK DMGQRSYSTA 120
  121 KNFAKVGALF SGIECGIEGL RAKNDLGNGV AAGCLTGAIL AKNGGPQAAA VGCAGFAAFS 180
  181 AAIDAWMRMP SEED

Type	Start	End	Confidence
Cytoplasmic	1	37	0.97
Transmembrane Helix	38	61	0.89
Non-Cytoplasmic	62	166	0.89
Transmembrane Helix	167	187	0.84
Cytoplasmic	188	194	0.82