YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32404698, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFQIFPII SGVVWLGTLL GLLIYWCTDE NRRHYASMDA RQTIAYISDV GASTLKPLFI  60
   61 AGCSVTTVFL DLSFGADRWL RHKGRLVPNT TVTEKVLSGI TIVFAIVGTC GLILLSIFDT 120
  121 ARYPRLHDIF LLLFIAGYVI SAIFICWEYQ RLGMRYREHR VLRISFWVKL AFVVVEIILA 180
  181 VAFASCSYTG HYNPAAVLEW TIAFIFSFYI FSFWIDLYPA VRTKGTGGYR GNKGMNEHME 240
  241 HGSREEQGIA GSDRTLMGEA YAAAHHGHDQ RNSYYSGNGY SGSRPGTAPN QQSGLRGMAL 300
  301 PNDF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.78
Transmembrane Helix	7	28	0.93
Non-Cytoplasmic	29	56	0.81
Transmembrane Helix	57	75	0.84
Cytoplasmic	76	95	0.92
Transmembrane Helix	96	118	0.94
Non-Cytoplasmic	119	128	0.77
Transmembrane Helix	129	147	0.97
Cytoplasmic	148	165	0.91
Transmembrane Helix	166	188	0.90
Non-Cytoplasmic	189	195	0.81
Transmembrane Helix	196	218	0.87
Cytoplasmic	219	304	0.99