YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85081955
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPPTTPLAG AAAATVLLLA GGLPSTITTA AAAAAAAPAE IMRCKEIVVD GHKYDFGELG  60
   61 GPHTVVTNEY DPPAYYNYTY TLDICAPLKR KGDVKKEEQC GGDARVCRLK HHYSPSDKKS 120
  121 TFETATTLAG GSSFHYEATK LDSSSDHKDG GVKLTFSGYK HQGRQQKVVI NFVCNKTLTG 180
  181 TEGEVESSED IQYEKPKLLL ATRDDNDKKK EEEGDDGYPE TQLLKNETAT ALLWNGYKRV 240
  241 GDDVDQLELT WNTKFACLDA SGGDKDKPKD GDDKDKPKDG DKDKPKDGDN KDGGGNKGGN 300
  301 GEEDINKSWG FFTWLVVLLF LGIAAYLIFG SWLNYNRYGA RGWDLLPHGD TIRDIPYLLK 360
  361 DWTRRVLNTV QSSGSRGGYS AV

Type	Start	End	Confidence
Signal Peptide	1	33	0.97
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	309	0.99
Transmembrane Helix	310	333	0.90
Cytoplasmic	334	382	0.98