YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85075896
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQEKLRTPA LDRYFAITAN LGTHTFFMIG LPVLFWCSFS SFGKGLVHIL AAGVFWTGFI  60
   61 KDMLSLPRPL SPPLHRITMS GSAALEYGFP STHSANAVSV TVYSILVLHS DKNTFSPSTT 120
  121 FALELLAYFY AFSIVFGRLY CGMHGFLDVI IGSIMGAAIS YIEFYYGPPF QDWLYASDYL 180
  181 APILFAITIL ILVRIHPEPA DDCPCFDDSV SFAGVIVGLE IGTWHFARSR WNHIYNGPNA 240
  241 LFDLSALGWP VIVIRLILGV LIIFAWREVM KPTLLKVLPH LFRVIETHGL SLPRRFFMPA 300
  301 SEYKDVPLNL RDDEVLPKVS DIPRMMRSIR GPGRGRAVSI GPQSAADAYE TLAYRERKRR 360
  361 ESLSSEKGSG LKQAQSTAEG TDGEESMVDQ TAHSSGVEKY ERQMGQGQVV VESTGNLSPN 420
  421 SSAVEEPGLL GAGHLPLPVP SS

Type	Start	End	Confidence
Cytoplasmic	1	13	0.94
Transmembrane Helix	14	36	0.87
Non-Cytoplasmic	37	44	0.69
Transmembrane Helix	45	64	0.88
Cytoplasmic	65	84	0.79
Transmembrane Helix	85	107	0.67
Non-Cytoplasmic	108	117	0.68
Transmembrane Helix	118	137	0.78
Cytoplasmic	138	144	0.64
Transmembrane Helix	145	165	0.88
Non-Cytoplasmic	166	174	0.83
Transmembrane Helix	175	195	0.91
Cytoplasmic	196	204	0.87
Transmembrane Helix	205	227	0.87
Non-Cytoplasmic	228	245	0.92
Transmembrane Helix	246	266	0.95
Cytoplasmic	267	442	0.97