YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28916905, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRTLPTLT IDEVESHNSA KSCYVTVGRN VYDVTDFLDS HPGGADLVLD WAGKDIGAIL  60
   61 KDEASHTHSE AAYEVLDESL VGYLASGNGA AANGTTKDGE NGTEQQWVHP RTGMSCEEDL 120
  121 SKDTDYNADY KTHKFLDLNK PLFMQIWNGG FSKEFYLDQV HRPRHYKGGE SAPLFGNFLE 180
  181 PLSKTPWWLI PLVWWPPISY GVSVAFQGFG SVAPVAGYFG FGLAFWTLIE YILHRFLFHL 240
  241 DYYLPDNRVG ITAHFLLHGI HHYLPMDRYR LVMPPTLFVV LAAPFWKFAH AILFYNWYAA 300
  301 TAAFCGGVFG YTLYDMTHYF LHHQNLPAYY KELKKYHLAH HFLDYENGFG VTSAFWDKIF 360
  361 GTELVYNPKT N

Type	Start	End	Confidence
Cytoplasmic	1	186	0.86
Transmembrane Helix	187	209	0.71
Non-Cytoplasmic	210	214	0.45
Transmembrane Helix	215	234	0.82
Cytoplasmic	235	270	0.65
Transmembrane Helix	271	289	0.79
Non-Cytoplasmic	290	293	0.54
Transmembrane Helix	294	314	0.88
Cytoplasmic	315	371	0.72