YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28916785, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSHPRVEEV EDSDLEMSDP SEGDIDDFAE SDILVQRDAP PAYASKVMPG PSFTPLSAAH  60
   61 RAQAEKQHQQ FQAAQAAQAA AAAQQRQVPP PQYSQQQQQR QYTQPPGYPQ MQTTTDDSAY 120
  121 KSFQCLYPCY FDATRSRAEG RRVSKELAVP NPLATEIVNA CAQLRLSVVL EAGKLHPKDW 180
  181 ANPGRVKVNL KEFIRLHGEN GKLKNKHHLY ILVAEHLKKH PTTDESPALR VVVRGAGPPP 240
  241 REMLEEGKKW PRPAVPRGWK MSELLPYYSP AMTGGGVSEN FLKDMMKEMG PGGMPGMPGM 300
  301 PGGGAGAGAG GMPDMASLLQ GMGGMGGLGG LANMLGGMGG MGGSGATSPG ASGSEAAGKK 360
  361 KGKGKK

Type	Start	End	Confidence
Cytoplasmic	1	291	0.89
Transmembrane Helix	292	312	0.79
Non-Cytoplasmic	313	327	0.68
Transmembrane Helix	328	351	0.75
Cytoplasmic	352	366	0.82