YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85082020
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFTPNRLP SVQSQLPVVT CKVASLCAVA ALERPPPTNV ITPCRNWGNG PGQSPIPGPP  60
   61 VTRPASAQLG GWSPLILPLV IFQKSRQLFL NPFPPASHAV ESSHSAASST TTFTLDSFAQ 120
  121 HVASLFSRNQ QIHHQHQHNA TSPCTGWSSA YDCLTGARET RKDSHIHSSF WPLRFYDLQR 180
  181 ILSGAISLPA LPPFPYDNMP TRSSIPATPR IISPSPTPSE RDALDSYTGP MTRAARRRLA 240
  241 TPLPVSEEGN EEDGVPALRK ARTRSRSPVE TRPTAGRRTS KKRTTKTADA KTTSTDSTAA 300
  301 APKGDMAVSE KQEKEVSNGH LLPPQPAGYT GWGWKDISRS PSPLGLIPIH RHWKAFIHKH 360
  361 EVPRKALHVS IGFFVVWLYL SGTQTLSVCP YLMAALIPIA AVDVLRHHNA AFNRLYVKVL 420
  421 GALMRESEFT GYNGVIFYLL GAWIVLGFFP KDVGVVGTLL LSWCDTAAST FGRLYGRYTP 480
  481 RIRSGKSLAG SLAAFLVGVG TSAFFWGWLV PTKGPMPGDE LFMFTGTLRL PQLLSEAVGL 540
  541 TPAQATISGG LALGIMSLWS GFVAAASEVA NVCGLDDNLT IPVLSGLGIW GFLKIFG

Type	Start	End	Confidence
Cytoplasmic	1	363	0.70
Transmembrane Helix	364	381	0.72
Non-Cytoplasmic	382	387	0.67
Transmembrane Helix	388	408	0.85
Cytoplasmic	409	428	0.91
Transmembrane Helix	429	449	0.92
Non-Cytoplasmic	450	454	0.81
Transmembrane Helix	455	476	0.90
Cytoplasmic	477	487	0.89
Transmembrane Helix	488	509	0.93
Non-Cytoplasmic	510	542	0.88
Transmembrane Helix	543	563	0.88
Cytoplasmic	564	573	0.72
Transmembrane Helix	574	593	0.67
Non-Cytoplasmic	594	597	0.48