YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33566896
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.99
Transmembrane Helix	61	82	0.89
Non-Cytoplasmic	83	97	0.84
Transmembrane Helix	98	119	0.92
Cytoplasmic	120	126	0.89
Transmembrane Helix	127	148	0.88
Non-Cytoplasmic	149	153	0.64
Transmembrane Helix	154	172	0.90
Cytoplasmic	173	182	0.80
Transmembrane Helix	183	206	0.82
Non-Cytoplasmic	207	223	0.85
Transmembrane Helix	224	244	0.92
Cytoplasmic	245	285	0.94
Transmembrane Helix	286	304	0.92
Non-Cytoplasmic	305	311	0.66
Transmembrane Helix	312	329	0.93
Cytoplasmic	330	342	0.78
Transmembrane Helix	343	362	0.86
Non-Cytoplasmic	363	373	0.61
Transmembrane Helix	374	398	0.80
Cytoplasmic	399	404	0.63
Transmembrane Helix	405	421	0.60
Non-Cytoplasmic	422	434	0.39
Transmembrane Helix	435	454	0.62
Cytoplasmic	455	458	0.70
Transmembrane Helix	459	480	0.88
Non-Cytoplasmic	481	481	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSVRIPGPA RQAWAIVEQR PWLARRPFII HGPPWRLASQ QEDDVFKLMS RSAVKMVERY  60
   61 LPDPYVFVVL LTLVAAGAAM IIEGQTPMAV VRWWGNGFWG LLTFAMQMLL VLVTGYMLAS 120
  121 TPLVKRMLAR LASLATSAGG AIILVSVVSL AASWINWGFG LVVGALFAKQ IARQVRVDYR 180
  181 LLVASAYSGF IIWHGGLAGS IPLTIATEGH FSADKIGIIP TGDTIFAVFN LVIVVAMFIL 240
  241 VPLVNRLMLP DEKESVYVDP ARLEEASVPA SDDDKRPAAR LENSRLLAWL IAAGGLAYMF 300
  301 DYYVVRGAGL NLNVINFSFL ILAILLHGTP RRLLTSLDEA IKGGAGIVIQ FPFYAGIMAI 360
  361 MMDSGLAATL SEWFVSIASA ATLPFWTFIS AGIVNIFIPS GGGQWAVQSP IVISAAQALG 420
  421 ADMPRVAMAV AWGDAWTNML QPFWALPVLA IAGLKAKDIM GYCIIQLLVT GVIISVGLSF 480
  481 F