YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33574349
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.88
Transmembrane Helix	13	34	0.88
Non-Cytoplasmic	35	51	0.87
Transmembrane Helix	52	71	0.96
Cytoplasmic	72	89	0.90
Transmembrane Helix	90	111	0.93
Non-Cytoplasmic	112	143	0.95
Transmembrane Helix	144	166	0.89
Cytoplasmic	167	186	0.91
Transmembrane Helix	187	210	0.88
Non-Cytoplasmic	211	226	0.83
Transmembrane Helix	227	249	0.88
Cytoplasmic	250	260	0.84
Transmembrane Helix	261	281	0.95
Non-Cytoplasmic	282	314	0.92
Transmembrane Helix	315	336	0.87
Cytoplasmic	337	344	0.84
Transmembrane Helix	345	364	0.92
Non-Cytoplasmic	365	400	0.87
Transmembrane Helix	401	421	0.90
Cytoplasmic	422	440	0.84
Transmembrane Helix	441	461	0.90
Non-Cytoplasmic	462	469	0.68
Transmembrane Helix	470	490	0.93
Cytoplasmic	491	652	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNELKPTIN KPVFLTSALF ILLLVVFTIA APATAQDFFN VIQAWILGNA SWFYILTVAI  60
   61 ILLAVIFVAV SRYGNIKLGP DHSEPDYRDI TWFAMLFSTG MGIGLMFFGV AEPVMHFIDP 120
  121 PVGEGGTALA AREAMKITFF HWGLHAWAIY ASVALVLAFF CFRHGLPLTL RSALYPLIGE 180
  181 RIYGPIGHAV DIFAIIGTVF GVATSLGLGV AQINSGLNHL FGVPVGIPTQ IILIVISCGL 240
  241 ATISVASGLD RGIRILSEAN LLLAVVLLLF VLVLGPTVFL LQTFVQNTGA YLSDIVNKTF 300
  301 NLYAYEPTDW IGGWTLFYWG WWIAWSPFVG LFIARISRGR TIRQFVGGVL LVPAGFTLFW 360
  361 MTVFGDAAIH AVLVEGVGGL AETVRADSSL ALFAFLEHLP WGSVTSVVAI VMVVVFFVTS 420
  421 ADSGALVVDQ LASGGVESTP VWQRIFWSTL MGVVAIALLL ADGLQALQTA TIASALPFSI 480
  481 ILLLALWGLF KALRLDATKR SLLHRTITRT QPVRGQNWEH RLRNIVMMPR RAHVLRFISD 540
  541 VVRPAMDDVA EALRKEGYEA QVVDGEESEV RLEVSHGVYL DFSYAVYPRS EVRPSLTPQE 600
  601 ANDEEERRYF RAEVHLREGG QDYDIMGWTR DEVIGDILDQ YERHRHYLHV VH