YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32403310, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	185	0.99
Transmembrane Helix	186	205	0.97
Cytoplasmic	206	214	0.83
Transmembrane Helix	215	237	0.89
Non-Cytoplasmic	238	260	0.79
Transmembrane Helix	261	281	0.86
Cytoplasmic	282	289	0.89
Transmembrane Helix	290	313	0.88
Non-Cytoplasmic	314	320	0.84
Transmembrane Helix	321	344	0.89
Cytoplasmic	345	365	0.89
Transmembrane Helix	366	386	0.92
Non-Cytoplasmic	387	406	0.92
Transmembrane Helix	407	427	0.88
Cytoplasmic	428	554	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSWAYAFFL LVLSVWTVQA LEVKLDESEE NRQRCAGMYS KQTWDGPVNP FISVKFTDFG  60
   61 SDAGDDPIVS LLIFEWQDSD LVGVLPEGAD RRIGICEPQY ADAGYCNTTN VGEYILAPNA 120
  121 TALSKNIVFT DAIHLKKSAP VKYQIKNTGY YCVLTDKYTA DRYEALVEFR NAYGELPATQ 180
  181 IPKLPFYGGI TILYALVLAF WGFLYFQHRS DILAVQNYIT AILIFLVIEM LMTWGFYDFL 240
  241 NRHGSNVGSR VLLIVVAILN AARNSFSFFL LLIVCMGYGV VKHTLGRTMI YVRWLAIAHF 300
  301 VFGIVYAITG LLVNPDSAGP FVLLIILPLA GTLTAFYVWT LNSLSWTLKD LKERKQHVKE 360
  361 GMYRKLWWCI LISILVIFGF FFWNSFSFAQ ASDPGYVPFH WKSRWFILDG WPNLVYFADV 420
  421 AFIAYVWRPT ANNKRFAMSD EIAQDDDGII EFSNLDIGAP DDSDDEEAQV GMKGKKNQSA 480
  481 SGGSGSGAST SQQQSRNLAG PSSSSQQQQQ QPRSPNPQRD SMDGETIFAV GEDGDKFSSD 540
  541 EDSDEEGNLV RAKK