YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85078561
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.47
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLNTSPLL GLRSASASLS QSMTSRPFVQ QHRHQNGGLK TPIFLLQSHS LWQSCSARGR  60
   61 MNNGLSVAPA VRARHFTVSK WWRSQEDKSG PKPPSRLAKT TAALKAALPQ TGAITKRENI 120
  121 HTIPNWLTFS RLVAAPFIGY CILHDHHAWT LGLFAYAGVT DLLDGWIARK WNQGTVVGTI 180
  181 IDPMADKTLM TVLTVALATK GLLPVWLAVI ILGRDVALAI SALYFRWISL PPPKTMARYW 240
  241 DFSLPSAEVR PTAISKYNTA LQLGLMGLTT VAPVVPALDL AWSLMVMQYG VAVTTIWSGA 300
  301 SYVYSKDAVK ILTQPATPKG AEKEGNTKVV DEVEAKKVED ETATKQ

Type	Start	End	Confidence
Signal Peptide	1	17	0.57
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	204	0.60
Transmembrane Helix	205	228	0.71
Cytoplasmic	229	258	0.74
Transmembrane Helix	259	278	0.69
Non-Cytoplasmic	279	284	0.61
Transmembrane Helix	285	304	0.63
Cytoplasmic	305	346	0.75