YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PBN1_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRERITFIQK QGDSIEPTTL KIKGGVLNGP EIQAAREDRL TIAIDELPKD LQALLGTAHE  60
   61 LHIRYVSSQP YEAITPLLAR LPPGFHLFYT PAGQADATSP ALCLALNQIF GNVQCENPEK 120
  121 SFTTLPRDRF SHSAAYQFYQ PSVDLSPFIA LVKEKLCSSS KDQSCAARAD RLANASSLDI 180
  181 SYDAISHAVK LTATWPYQKQ EVHATSRPQT RTEVGVLNSD RPGHLEPHEL GISGLLTVLG 240
  241 QDKKPSATMF AFASRHRDAE SSFSAEFLEP TGLHPTLKLR LESSKPPIED AYCSPHAYFT 300
  301 LPKTIFADRH QLSDDLFLAS KNLTGLRYIS QPVDLEAPEY VEKRWGSSLL LELSPPEHEE 360
  361 SKSWTVQVPL HLRYLSPAEG GYTDIQVPYP AVFWACAAEE GTKFPNNPFE KANLGYDGLF 420
  421 GPRTVFWHVE PRPTIGSRLS NMIKVPVLDT NKAEWVSGGT GLAVLLGFAW IMWKLFGVLS 480
  481 KSGYQNQPSQ AAEVVKAKKN Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	454	0.89
Transmembrane Helix	455	476	0.64
Cytoplasmic	477	501	0.59