YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28917452, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILPYATALP KLGALQDCSD FSKTVTPFLP QLYALPRQTL DTIFNGGSFL KLYMETNPFI  60
   61 SGLGISILLG GVFLVAAEVN RNYSQVDRFW SILPTLYIAH FATWARLAGI PSRRIDAALL 120
  121 FSTIWSIRLT YNYWRKGGYN VGSQDYRWDI VRASMPKLAF HILNWTFISF IQSVLLYMLA 180
  181 SPVYVLLLAT QFEPELSTAD IGFVVMELGL ILTEFIADHQ QWVFQSAKIE YKTSGQIPAG 240
  241 HKQADLDRGF ITSGLWAYSR HPNFAAEQSI WLTLYQWGCF ATNTLYNWTI VSPIMLMSVF 300
  301 QGSTWLTERI TAGKYPEYSA YQKQVGTFVP KTLKGYKTPV PKFIRTSDLA KKLQEKENKK 360
  361 QK

Type	Start	End	Confidence
Cytoplasmic	1	57	0.88
Transmembrane Helix	58	77	0.95
Non-Cytoplasmic	78	88	0.73
Transmembrane Helix	89	108	0.86
Cytoplasmic	109	161	0.66
Transmembrane Helix	162	186	0.82
Non-Cytoplasmic	187	283	0.60
Transmembrane Helix	284	300	0.52
Cytoplasmic	301	362	0.62