YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85082953
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.72
Transmembrane Helix	92	106	0.29
Non-Cytoplasmic	107	122	0.45
Transmembrane Helix	123	142	0.70
Cytoplasmic	143	187	0.75
Transmembrane Helix	188	209	0.82
Non-Cytoplasmic	210	214	0.56
Transmembrane Helix	215	232	0.50
Cytoplasmic	233	298	0.73
Transmembrane Helix	299	319	0.86
Non-Cytoplasmic	320	347	0.89
Transmembrane Helix	348	371	0.84
Cytoplasmic	372	418	0.96
Transmembrane Helix	419	440	0.89
Non-Cytoplasmic	441	445	0.72
Transmembrane Helix	446	465	0.88
Cytoplasmic	466	482	0.81
Transmembrane Helix	483	505	0.89
Non-Cytoplasmic	506	533	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTATTTG LDPAVHTSND NVIRRTHGTE NGSTPNDKAN AGGEPETETK RHSKKVVRSK  60
   61 YRHVEAVHSQ SRPSCLSHDT TESPSFLGFR NLMVIVLANN SHQYGVLICI GCHDFRKSDI 120
  121 NLGLLLYFLI PCHLFIAYII EYYAAVQARA ERNVSASEQN AKEHQHQDGT NSPTEEQHRK 180
  181 FQSTWKLVRL LHAINVTTAL VLTSYVVYYH IHHPLIGTLT EVHAIVVWLK TASYAFTNRD 240
  241 LRHAYLHPAR GELDALPGLY AECPYPENIT MGNLCYFWWA PTLVYQPVYP RTAKIRWSFV 300
  301 AKRCGEVICL SVFIWFLSAQ YATPVLRNSL DKIASLDIPS IVERLLKLST ISLIIWLAGF 360
  361 FALFQSFLNA LAEVTRFADR SFYDEWWNSE SLGVYWRTWN KPVYQYFKRH VYSPMRSRGW 420
  421 SNATASLAVF FLSAVLHELL VGVPTHNLIG VAFLGMFLQL PLIQFTKPLE KKTSPNGKLL 480
  481 GNIIFWVSFT IFGQPFAALM YFYAWQAKYG SVSKMTTSQQ LVQQGQGTCP PLV