YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85082845
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSTKSEPF PELSSAADRQ LHSEATAARR RRKSSGLGQA LRVGDTGAPA LATSLALSQK  60
   61 DSKDVAAPPG KKYSKRRKAR SLLRRAKNYA IKHTWALPLA ILMAFLSLYA INPTESNPIH 120
  121 HFIFLSYKLP TSSSDEIPQY GKGLWDIAFV SFYTIVLSFT REFIMQEVLR PMARWAGLKS 180
  181 RGKQARYMEQ MYTALYFGIM GPVGMFVMSR TPVWYFNTVG MYENFPHKTH VAVFKFYYLF 240
  241 QAAYWAQQAI VLLLGMEKPR KDFRELVCHH IVSLALIGLS YRFHFTYIGL AVYITHDISD 300
  301 FFLATSKTLN YLDHALTGPY YFTFMCVWIY LRHYLNLRII WSLFTEFKTV GPYELNWETQ 360
  361 QYKCSLSFVI TLALLGSLQA LNLFWLFFII RIAYRFVVHK VAKDDRSDDE SELEDDVTEE 420
  421 KPTVNGSTTK R

Type	Start	End	Confidence
Cytoplasmic	1	90	0.99
Transmembrane Helix	91	111	0.93
Non-Cytoplasmic	112	143	0.95
Transmembrane Helix	144	165	0.89
Cytoplasmic	166	191	0.92
Transmembrane Helix	192	213	0.90
Non-Cytoplasmic	214	235	0.88
Transmembrane Helix	236	256	0.88
Cytoplasmic	257	265	0.95
Transmembrane Helix	266	285	0.87
Non-Cytoplasmic	286	314	0.78
Transmembrane Helix	315	334	0.75
Cytoplasmic	335	365	0.71
Transmembrane Helix	366	389	0.86
Non-Cytoplasmic	390	431	0.70