YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32476849, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAETTAAKI NQYVRWGSIA IVVVSLLVII RTLPFDVVTS AMNEWIGSLG WWGPVVLVLL  60
   61 YIVATVLFVP GTILTLAAGA IFGLLVGTIV VSIGSTIGAA LAFLISRYVA RERVAKLAKD 120
  121 NRRFAAIDRA IEEGGWKIVG LLRLSPALPF NLQNYLYGLT PIRFWPYVLT SWIAMLPATF 180
  181 LYVYLGHVTG AAVGADRERT TAEWAMLAVG LLATIAVTVY VTRLASQKLD EQVDQDQREN 240
  241 ADTSKQSGSV ATSNARRTVL LATIAVSMVL LAVYVSMNSG DIESTVTSWL GPPAVDATET 300
  301 HSPNPSGPNI DHSLLDEVLA THVQEGGWVN YEALRDNTGK LDRYLDVVAS APWDDLGRDE 360
  361 KLALLLNGYN ASTLKLIVDH YPVDSIKDIP ATDRWDAVRW NIGGNIWSLN QIEHEQIRPH 420
  421 FKEPRIHFAL VCAAVGCPPL RREAYHPDRL NEQLEDQTRI VHDHATWFEH LAGSNELRLT 480
  481 KLYDWYAGDF LQSAESIPHF AATYSQSLRQ AIDSEQDPTV EWLPYDWSLN TLPNRRPR

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.64
Transmembrane Helix	13	35	0.86
Cytoplasmic	36	48	0.57
Transmembrane Helix	49	74	0.82
Non-Cytoplasmic	75	79	0.42
Transmembrane Helix	80	105	0.88
Cytoplasmic	106	163	0.64
Transmembrane Helix	164	186	0.84
Non-Cytoplasmic	187	201	0.60
Transmembrane Helix	202	222	0.90
Cytoplasmic	223	257	0.70
Transmembrane Helix	258	277	0.76
Non-Cytoplasmic	278	538	0.89