YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32474179, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLQKTKINP PRGGEGLQPE YYTRMNTSSS PISSPLGSPA PVTSGLSAGL QTPEPQPSRP  60
   61 APGQNRLEEI SVVIPAMNEE ASLSELHGRI LEVCAEQNVR VQIVFVDDGS TDKTWQKMVS 120
  121 LCGTASDQSH STSALRLRRN FGKAAALSAG FSVARGSIVF TMDADLQDDP TEIPRFLEKI 180
  181 QGGLDVVSGW KQTRHDPWHK VLPSRVFNAL VSSLTGVRLH DHNCGFKAYR REVLAEVDLY 240
  241 GERHRFIPVL ASARGFRVGE IVVQHHARQH GVSKYGVSRL VKGFLDLLSI HLVTGYGRRP 300
  301 LHLIGTAGLL CFAVGSVGIT YLSIKWVWSR MGDGEVLHLH STAIFYYCIL AVLLGAQCVL 360
  361 AGLLAELVIS VAAARDRREI MNMSDAQTNS VSNTADSSRL LPNASGYSVS DWAGLGEPNH 420
  421 QSTSSRDVDS TGPIHDA

Type	Start	End	Confidence
Cytoplasmic	1	300	0.88
Transmembrane Helix	301	324	0.89
Non-Cytoplasmic	325	342	0.84
Transmembrane Helix	343	369	0.87
Cytoplasmic	370	437	0.89