YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32397573, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFGMRLNQQ AAKFGPAGTD QRCGACGYSH DATTSKWHAV CVSRDVQCCW PDRPCISRHQ  60
   61 SSASWQTTPL KRNVTGRSQT TLLDFQFTSM TDWLQQQTPV LQALLAGIFT WVLTALGAAV 120
  121 VFGLTNVPRK LFDAMLGFAG GVMLAASYWS LLAPSIEAAA EQGWPSWLPA AVGFLIGGAF 180
  181 LYGLDRGLPH LHRGMPTESA EGPKTAWQRS VLLIAAITLH NIPEGLAVGV AFGSASAGIE 240
  241 SATLSGATAL AIGIGLQNLP EGIAVAVPLR GEGMSRMKSW LIAQASAIVE PIAAVLGAAI 300
  301 VVYAAPVLPF ALSFAAGAMV YVVVEELIPE THQEGNEDLA TLCLTLGFTV MMILDVSLG

Type	Start	End	Confidence
Non-Cytoplasmic	1	102	0.92
Transmembrane Helix	103	124	0.94
Cytoplasmic	125	133	0.73
Transmembrane Helix	134	152	0.95
Non-Cytoplasmic	153	165	0.76
Transmembrane Helix	166	184	0.96
Cytoplasmic	185	204	0.89
Transmembrane Helix	205	231	0.70
Non-Cytoplasmic	232	240	0.59
Transmembrane Helix	241	260	0.79
Cytoplasmic	261	279	0.78
Transmembrane Helix	280	302	0.87
Non-Cytoplasmic	303	306	0.57
Transmembrane Helix	307	324	0.77
Cytoplasmic	325	338	0.60
Transmembrane Helix	339	358	0.81
Non-Cytoplasmic	359	359	0.73