YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32307578
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTHYTSFPS SSARSNKYLV LSLVANAILL VGIGCVSLQG PLRAGFAARS TASQSINVIN  60
   61 GLPQNLPRAG RLAVNSQVLD KPHVTTKSQQ IFDEAKTLMP GGVSSPVRAF KSVGGEPVVF 120
  121 ERVKGAYAWD VDGNKYIDYV GTWGPAILGH ADDVVLGKIK ETMEKGTSFG APGPLENELA 180
  181 KRVIDAVPSV EMVRFTNSGT EACMGMIRLI RAYTKREKVI KFEGCYHGHA DSFLVQAGSG 240
  241 VATLGLPDSP GVPKAATSAT LCAQYNDIDS VKKIFEENKD EIAGIILEPV VGNSGFISPT 300
  301 KEFLQGLRQL CDDNGAVLVF DEVMTGFRIA YGGAQEHFGV TPDVTTMGKV IGGGLPVGAY 360
  361 GGKKEIMEMV APAGPMYQAG TLSGNPLAMA AGIATLDALK QPGTYEKLDK LTGKLINGIL 420
  421 EAGKAAGHSL CGGHISGMFG FFFTEGPVNC FADATKSDTD KFAKWHRGML ERGVYLAPSQ 480
  481 YEAGFMSLAH TEEDIEKTIE AAKEVFATL

Type	Start	End	Confidence
Signal Peptide	1	38	0.51
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	509	0.97