YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HPCH_SHIFL
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSFKAALK AGRPQIGLWL GLSSSYSAEL LAGPGFDWLL IDGEHAPNNV QTVLTQLQAI  60
   61 APYPSQPVVR PSWNDPVQIK QLLDVGTQTL LVPMVQNADE ARKAVRATRY PPAGIRGVGS 120
  121 ALARASRWNR IPDYLQKAND QMCVLVQIET REAMKNLPQI LDVEGVDGVF IGPADLSADM 180
  181 GYAGNPQHPE VQAAIEQAIV QIREAGKAPG ILIANEQLAK RYLELGALFV AVGVDTTLLA 240
  241 RAAEALAARF GNSSSISMAK QNNNSVY

Type	Start	End	Confidence
Signal Peptide	1	27	0.72
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	267	0.97