YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227837721, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQSYGRLVS RAAIAATAMA SLLLLIKIFA WWYTGSVSIL AALVDSLVDI GASLTNLLVV  60
   61 RYSLQPADDN HSFGHGKAES LAALAQSMFI SGSALFLFLT GIQHLVSPTP MTDPGVGVIV 120
  121 TIVALICTII LVSFQRWVVR RTQSQAVRAD MLHYQSDVMM NGAILLALGL SWYGWHRADA 180
  181 LFALGIGIYI LYSALRMGYE AVQSLLDRAL PDEERQEIID IVTSWPGVSG AHDLRTRQSG 240
  241 PTRFIQIHLE MEDSLPLVQA HMVADQVEQA ILRRFPGSDV IIHQDPCSVV PREGKRSMLS 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	31	0.90
Non-Cytoplasmic	32	38	0.77
Transmembrane Helix	39	60	0.91
Cytoplasmic	61	80	0.91
Transmembrane Helix	81	102	0.92
Non-Cytoplasmic	103	114	0.81
Transmembrane Helix	115	138	0.88
Cytoplasmic	139	152	0.92
Transmembrane Helix	153	173	0.88
Non-Cytoplasmic	174	179	0.72
Transmembrane Helix	180	199	0.90
Cytoplasmic	200	300	0.96