YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24115287, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFMQRSKDS LAKWLSAILP VVIVGLVGLF AVTVIRDYGR ETAAARQTLL EKGSVLIRAL  60
   61 ESGSRVGMGM RMHHAQQQAL LEEMAGQPGV RWFAVTDEQG TIVMHSNSGM VGKQLYSPQE 120
  121 MQQLHPGDEE AWRRIDSADG EPVLEIYRQF QPMFAAGMYR MRHMQQYAAT PQAIFIAFDA 180
  181 SNIVSAEDRE QRNTLIILFA LATVLLASVL SFFWYRRYLR SRQLLQDEMK RKEKLVALGH 240
  241 LAAGVAHEIR NPLSSIKGLA KYFAERAPAG GEAHQLAQVM AKEADRLNRV VSELLELVKP 300
  301 THLALQAVDL NTLINHSLQL VSQDANSREI QLRFTANDTL PEIQADPDRL TQVLLNLYLN 360
  361 AIQAIGQHGV ISVTASESGA GVKISVTDSG KGIAADQLEA IFTPYFTTKA EGTGLGLAVV 420
  421 HNIVEQHGGT IQVASQEGKG STFTLWLPVN ITRKDPQG

Type	Start	End	Confidence
Cytoplasmic	1	10	0.68
Transmembrane Helix	11	35	0.77
Non-Cytoplasmic	36	193	0.68
Transmembrane Helix	194	215	0.94
Cytoplasmic	216	458	0.48