YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|124500537, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	31	0.97
Non-Cytoplasmic	32	37	0.79
Transmembrane Helix	38	59	0.89
Cytoplasmic	60	66	0.88
Transmembrane Helix	67	87	0.94
Non-Cytoplasmic	88	92	0.73
Transmembrane Helix	93	112	0.94
Cytoplasmic	113	118	0.84
Transmembrane Helix	119	137	0.90
Non-Cytoplasmic	138	148	0.69
Transmembrane Helix	149	168	0.78
Cytoplasmic	169	355	0.86
Transmembrane Helix	356	375	0.80
Non-Cytoplasmic	376	379	0.62
Transmembrane Helix	380	397	0.87
Cytoplasmic	398	404	0.75
Transmembrane Helix	405	425	0.93
Non-Cytoplasmic	426	431	0.74
Transmembrane Helix	432	449	0.97
Cytoplasmic	450	455	0.81
Transmembrane Helix	456	477	0.81
Non-Cytoplasmic	478	484	0.76
Transmembrane Helix	485	503	0.96
Cytoplasmic	504	655	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFSIANQH IRFAVKLATA IVLALFVGFH FQLETPRWAV LTAAIVAAGP AFAAGGEPYS  60
   61 GAIRYRGFLR IIGTFIGCIA GLVIIIAMIR APLLMILVCC IWAGFCTWIS SLVRIENSYA 120
  121 WGLAGYTALI IVITIQPEPL LTPQFAVERC SEIVIGIVCA IMADLLFSPR SIKQEVDREL 180
  181 ESLLVAQYQL MQLCIKHGDG EVVDKAWGDL VRRTTALQGM RSNLNMESSR WARANRRLKA 240
  241 INTLSLTLIT QSCETYLIQN TRPELITDTF REFFDTPVET AQDVHKQLKR LRRVIAWTGE 300
  301 RETPVTIYSW VAAATRYQLL KRGVISNTKI NATEEEILQG EPEVKVESAE RHHAMVNFWR 360
  361 TTLSCILGTL FWLWTGWTSG SGAMVMIAVV TSLAMRLPNP RMVAIDFIYG TLAALPLGLL 420
  421 YFLVIIPNTQ QSMLLLCISL AVLGFFLGIE VQKRRLGSMG ALASTINIIV LDNPMTFHFS 480
  481 QFLDSALGQI VGCVLAFTVI LLVRDKSRDR TGRVLLNQFV SAAVSAMTTN VARRKENHLP 540
  541 ALYQQLFLLM NKFPGDLPKF RLALTMIIAH QRLRDAPIPV NEDLSAFHRQ MRRTADHVIS 600
  601 ARSDDKRRRY FGQLLEELEI YQEKLRIWQA PPQVTEPVHR LAGMLHKYQH ALTDS