YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30042730, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISLLQAFA LGIIAFIAGL DMFNGLTHMH RPVVLGPLVG LVLGDLHTGI LTGDTLELVW  60
   61 MGLAPLAGAQ PPNVIIGTIV GTAFAITTGV KPDVAVGVAV PFAVAVQMGI TFLFSVMSGV 120
  121 MSRCDRMAEN ADTRGIERVN YLALLALGTF YFLCAFLPIY FGAEHAKTII DVLPQRLIDG 180
  181 LGVAGGIMPA IGFAVLLKIM MKNVYIPYFI LGFVAATWLK LPVLAIAAAA LAMALIDLLR 240
  241 KSPEPTQPAA QKEEFEDGI

Type	Start	End	Confidence
Cytoplasmic	1	4	0.72
Transmembrane Helix	5	27	0.84
Non-Cytoplasmic	28	32	0.58
Transmembrane Helix	33	53	0.74
Cytoplasmic	54	65	0.47
Transmembrane Helix	66	90	0.71
Non-Cytoplasmic	91	97	0.68
Transmembrane Helix	98	120	0.90
Cytoplasmic	121	140	0.77
Transmembrane Helix	141	161	0.96
Non-Cytoplasmic	162	176	0.79
Transmembrane Helix	177	199	0.87
Cytoplasmic	200	208	0.68
Transmembrane Helix	209	236	0.79
Non-Cytoplasmic	237	259	0.81